Basepair Inc

Founded 2015

Analyze and visualize genomic sequencing data directly inside your own cloud account

You can use Basepair to process, analyze, and visualize next-generation sequencing data in your own cloud infrastructure. It connects to your Amazon Web Services account so data stays in place without costly transfers. Researchers can run standard pipelines for RNA-Seq, whole genome sequencing, ChIP-Seq, and single-cell assays using a point-and-click interface. Bioinformaticians can execute custom workflows with Nextflow, WDL, or command-line scripts. The system automatically archives large raw files to reduce cloud storage expenses while keeping interactive charts available for exploration.

What Basepair Inc does

Upload and import sequencing datasets from external repositoriesRun automated variant calling pipelines on genomic samplesGenerate interactive heatmaps and volcano plots for differential expressionConfigure data retention policies to move raw files to cold storageConnect Basepair directly to an existing AWS cloud infrastructureExecute command-line bioinformatics workflows using Nextflow or WDLExecutes analysis inside your own AWS account without data movementRuns standard NGS pipelines for RNA-Seq, ChIP-Seq, and whole exome sequencingProvides point-and-click graphical interface alongside CLI and API accessAutomatically moves processed FASTQ and BAM files to cold storageImports data directly from BaseSpace, NCBI GEO/SRA, and FTP serversSupports custom pipeline creation via Nextflow, WDL, and DockerGenerates interactive visualizations that update when parameters change

Frequently asked

AWS

Github

Docker

Want a tailored answer?

See whether Basepair Inc fits your stack.

Techbible weighs Basepair Inc against what you already pay for, your team shape, and the work that's actually happening. Free to start.

Side by side

Compare Basepair Inc

Search the catalog or pick a similar tool to compare pricing, features, and fit.

Or pick from similar tools

More in Healthcare & Life Sciences

All tools →

Luminai

Automate repetitive healthcare administrative tasks across disconnected hospital systems and records

Rhazes AI

Transcribe patient consultations, generate clinical notes, and suggest billing codes in real time

Tennr

Automate patient intake, insurance verification, and care coordination workflows for healthcare providers

10x Science

Characterize proteins and analyze complex peptide mapping data in real time

3QHS

Manage value-based care programs, risk stratification, and patient interventions for healthcare organizations

Abacus Insights

Unify fragmented healthcare payer data into organized records for compliance and cost management

Abett

Collect and manage healthcare data for self-insured employers

Abridge

Transcribe patient visits and draft clinical notes automatically during medical appointments